Formatting differential expression results from limma — format_res_limma • Omix

Formatting differential expression results from limma

format_res_limma(
  dt,
  gene_id_conversion = NULL,
  log2FoldChange = 0,
  n_label = 20,
  padj = 0.05
)

Arguments

dt: Differential expression results dataframe from limma
gene_id_conversion: Default to NULL. Can provide a dataframe with gene_name and uniprot_id columns to easily convert nomenclature.
log2FoldChange: Log2FC absolute threshold
n_label: maximum number of label on volcano plot
padj: adjusted p value threshold. Default to 0.05

Value

Formatted data frame

See also

Other Helper: counts_rna(), format_res_deseq(), get_background(), get_metadata(), processed_proteomics(), processed_rna()