plot_optimal_cluster.Rdplot optimal number of clusters from getClustNum()
Function adapted from package MOVICS (see ref)
plot_optimal_cluster(optk1, optk2, try.N.clust)Cluster Prediction Index
Gap statistics
A integer vector to indicate possible choices of number of clusters.
plot
Lu, X., et al. (2020). MOVICS: an R package for multi-omics integration and visualization in cancer subtyping. Bioinformatics, 36(22-23), 5539–5541.
Other Plotting:
circular_corrplot(),
communities_network(),
community_graph(),
correlation_heatmap_clusters(),
correlation_heatmap_supervised(),
correlation_heatmap(),
getStdiz(),
interactive_network(),
multiomics_heatmap(),
plot_OpenTarget(),
plot_communities(),
plot_components(),
plot_loadings(),
visualise_pathway(),
volcano_interactive_comparison(),
volcano_interactive(),
volcano_plot_deseq(),
volcano_plot_limma()