protein_DE_analysis.Rd
Performs single omic analysis of proteomic layer.
protein_DE_analysis(
multiassay,
slot = "protein_processed",
dependent = "diagnosis",
covariates = NULL,
levels = c("Control", "AD"),
log2FoldChange = 0.5,
padj = 0.05
)
Multiassay object generated by Omix
Default to "protein_processed"
Dependent variable for the DeSEQ2 analysis, usually the disease group variable
Technical and biological covariates
Character vector with reference group as first element.
Log2FC absolute threshold
adjusted p value threshold. Default to 0.05
Adds differential expression results to Multiassay object generated by Omix
Other Single-omic:
DE_multiomics()
,
rna_DE_analysis()
,
single_omic_comparisons()
,
spls_wrapper()
,
wgcna_wrapper()