Vertical integration with MEFISTO — integrate_with_MEFISTO • Omix

Vertical integration with MEFISTO

integrate_with_MEFISTO(
  multimodal_omics,
  num_factors = 5,
  scale_views = TRUE,
  metadata,
  time = "pseudotime"
)

Arguments

multimodal_omics: multimodal_object generated by get_multimodal_object
num_factors: Number of factors
scale_views: Logical whether to scale omics layers
metadata: metadata object generated by get_multimodal_object
time: Time covariates

Value

a list object with multimodal_object and model slots

See also

Other Multi-omic integration: getClustNum(), integrate_with_DIABLO(), integrate_with_MBPLS(), integrate_with_MOFA(), integrate_with_iCluster(), integrate_with_sMBPLS(), vertical_integration()