Generate a report for single omic analysis

Generate a report for single omic analysis

multi_omic_report(
  multiassay,
  report_folder_path = getwd(),
  report_file = "multi_omic_report_Omix",
  integration_model = "MOFA",
  database = "Reactome_2016",
  cluster = "C2-C1"
)

Arguments

multiassay

Multiassay experiment object generated by Omix

report_folder_path

report_folder_path folder path to save the report.

report_file

filename for report (without an extension).

integration_model

Possible integration methods are MOFA, DIABLO,sMBPLS,iCluster,MEIFESTO

database

Enrichment database GO_Molecular_Function_2021,GO_Cellular_Component_2021, GO_Biological_Process_2021, Reactome_2016 , KEGG_2021_Human , MSigDB_Hallmark_2020

cluster

In the case of multi-omics clustering, choose two clusters of interest for differential analysis

Value

Multi-omic analysis report html