Generate a report for single omic analysis — qc_report • Omix

Generate a report for single omic analysis

qc_report(
  multiassay,
  report_folder_path = getwd(),
  report_file = "QC_report_Omix",
  clinical_covariates = c("age", "sex", "diagnosis", "Braak", "amyloid"),
  dependent = "diagnosis",
  map_by_column = "sample_id"
)

Arguments

multiassay: Multiassay experiment object generated by Omix
report_folder_path: report_folder_path folder path to save the report.
report_file: filename for report (without an extension).
clinical_covariates: clinical covariates
dependent: Dependent variable, usually the disease group variable
map_by_column: The common column name to link metadata_rna and metadata_protein to the individual_metadata

Value

QC report html

See also

Other Report: multi_omic_report(), multi_omics_qc(), pathway_report(), proteomics_report(), single_omic_report()