Generate a report for single omic analysis — pathway_report • Omix

Generate a report for single omic analysis

pathway_report(
  pathways,
  report_folder_path = getwd(),
  report_file = "single_omic_report_Omix",
  database = "Reactome_2016",
  num_path = 20
)

Arguments

pathways: list of pathways
report_folder_path: report_folder_path folder path to save the report.
report_file: filename for report (without an extension).
database: Enrichment database GO_Molecular_Function_2021,GO_Cellular_Component_2021, GO_Biological_Process_2021, Reactome_2016 , KEGG_2021_Human , MSigDB_Hallmark_2020

Value

Single omic analyses report html

See also

Other Report: multi_omic_report(), multi_omics_qc(), proteomics_report(), qc_report(), single_omic_report()