Generate a report for single omic analysis

Generate a report for single omic analysis

proteomics_report(
  multiassay,
  report_folder_path = getwd(),
  report_file = "single_omic_report_Omix",
  slot = "ADvsControl",
  database = "Reactome_2016",
  num_path = 20,
  clinical_covariates = c("PHF1", "amyloid", "PMD")
)

Arguments

multiassay

Multiassay experiment object generated by Omix

report_folder_path

report_folder_path folder path to save the report.

report_file

filename for report (without an extension).

slot

Slot of interest

database

Enrichment database GO_Molecular_Function_2021,GO_Cellular_Component_2021, GO_Biological_Process_2021, Reactome_2016 , KEGG_2021_Human , MSigDB_Hallmark_2020

clinical_covariates

clinical covariates for table1

Value

Single omic analyses report html

See also

Other Report: multi_omic_report(), multi_omics_qc(), pathway_report(), qc_report(), single_omic_report()