Interface to OpenTargets database — OpenTarget_dataframe • Omix

Interface to OpenTargets database

OpenTarget_dataframe(disease_id = "MONDO_0004975", size = 1000, genes)

Arguments

disease_id: OpenTargets disease id. Default to "MONDO_0004975" (Alzheimer's Disease) Different disease ontologies can be found on https://www.ebi.ac.uk/ols/ontologies
size: Default to 3000
genes: input gene vector

Value

ggplot showing association scores from OpenTargets

See also

Other Multi-omic integration downstream analysis: Transcription_Factor_enrichment_supervised(), Transcription_Factor_enrichment(), circos_TF(), clustering_DE_analysis(), extract_loadings(), extract_multiomic_signature(), extract_weigths(), integrative_results_clustering(), integrative_results_sparse_supervised(), integrative_results_supervised(), integrative_results_unsupervised(), multiomics_modules(), multiomics_network_matrix(), multiomics_network(), plot_module_trajectory(), posterior_probability(), pseudotime_inference(), sign_signature()