Transcription factor target enrichment test — Transcription_Factor_enrichment_supervised • Omix

Transcription factor target enrichment test

Transcription_Factor_enrichment_supervised(
  multiassay,
  communities,
  signatures,
  TF_gmt = "Enrichr_Queries.gmt",
  direction = "negative"
)

Arguments

multiassay: multiassay
communities: communities slot generated generated by communities_network
signatures: signatures
TF_gmt: GMT file with Transcription Factors and target genes
direction: string indicating direction as "positive" or "negative"

Value

TF target enrichment in each modules

See also

Other Multi-omic integration downstream analysis: OpenTarget_dataframe(), Transcription_Factor_enrichment(), circos_TF(), clustering_DE_analysis(), extract_loadings(), extract_multiomic_signature(), extract_weigths(), integrative_results_clustering(), integrative_results_sparse_supervised(), integrative_results_supervised(), integrative_results_unsupervised(), multiomics_modules(), multiomics_network_matrix(), multiomics_network(), plot_module_trajectory(), posterior_probability(), pseudotime_inference(), sign_signature()