Get multiomics networks from multiassay object — multiomics_network • Omix

Get multiomics networks from multiassay object

multiomics_network(
  multiassay,
  list,
  correlation_threshold = 0.5,
  filter_string_50 = FALSE
)

Arguments

multiassay: Multiassay experiment object generated by Omix generate_multiassayfunction
list: named list of processed omic slots and features of interest
correlation_threshold: Absolute correlation threshold to draw edges in the network
filter_string_50: should be set to TRUE if MOFA integration was used

Value

List containing graph and matrix slots

See also

Other Multi-omic integration downstream analysis: OpenTarget_dataframe(), Transcription_Factor_enrichment_supervised(), Transcription_Factor_enrichment(), circos_TF(), clustering_DE_analysis(), extract_loadings(), extract_multiomic_signature(), extract_weigths(), integrative_results_clustering(), integrative_results_sparse_supervised(), integrative_results_supervised(), integrative_results_unsupervised(), multiomics_modules(), multiomics_network_matrix(), plot_module_trajectory(), posterior_probability(), pseudotime_inference(), sign_signature()